PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04988g02020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 292aa    MW: 31834.8 Da    PI: 9.12
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04988g02020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.15.3e-401778263
                    zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                              k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss
  Niben101Scf04988g02020.1 17 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNIPVGGGSRKNKKSSS 78
                              7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-251066IPR003851Zinc finger, Dof-type
PfamPF027016.8E-341875IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1612175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
NGWYLNWISS KKVRPQKDQA LNCPRCNSTN TKFCYYNNYS LSQPRYFCKT CRRYWTAGGS  60
LRNIPVGGGS RKNKKSSSNS SSYSNHVNNP LKKLPDLVNP PSHNHDQNPS NIHIEGSHDL  120
NLGFSSDFKT ITELIQVPNY DGNNKNNNSP SISPLPPPPP PSSSSSASSS SQLSALELIN  180
GITSRGMNNN SFMSMASIST DPNSVYNNSS GFSLPSLNFS LDHGLGNAAY GNNIQETNTS  240
GRFLFPFVGL KQISSTNTTN DGGNENNRDH HQPAEESTNG FWNGMLGGGG SW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766033.11e-162PREDICTED: dof zinc finger protein DOF4.6-like
RefseqXP_016469483.11e-162PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBLM1AWI31e-114M1AWI3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000319281e-114(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.49e-38Dof family protein